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Using Deep Learning in Visiopharm

Deep learning Method in the Classification section of the APP author.
Deep learning Method in the Classification section of the APP author.

Creating a Deep Learning APP - Step by Step Guide​

Understanding the Loss Curve and the other configuration parameters​

  • Loss curve, Metric ( selecting ebtween loss curve and error rate), Iterations, selecting the correct arcitecture

Error handeling​

  • input image needs to match what app is trained on,
  • not overwriting labels when training several apps,
  • maxs 3 color channels

Select Inputs dialog​

Select Inputs dialog

This dialog is opened when certain APPs are launched, where some color bands have yet to be defined, as indicited in the message: "APP cannot run because the image's color setup is different from what the APP expects."

Select Inputs dialog.
Select Inputs dialog.

To resolve this, simply select bands in the image from the dropdown menu that correspond to the Expected channel names, eg for DNA1 select the band in the image that contains this biomarker.

Using tensorboard/tensorboard integration​

Tensorboard is an open-source tool from Google, and we send information about training progress from your Visiopharm installation to Tensorboard. Tensorboard options are available from the dropdown menu next to the training plot icon .