Phenotype List

This section provides a description of the Phenotype List, where you can manage and review the identified phenotypes. It serves as a central repository for all phenotypic data. The Phenotype list gives you an overview over your selected Variables, and the co-occurrences. It also displays the Cell count of the individual phenotypes and their co-occurrences. You can toggle their visibility by clicking on the eye next to the Cell count.

Cells postive for selected stains shown in color, other cells shown in grey (Lung cancer tissue IMC).

Export phenotypes to Database

When you click on Export to Database a new dataset will be added with all the cells and their phenotypes

Export phenotypes to Database

Export to TSV file

Clicking on Export list to TSV file will export the phenotype list as a .tsv to any specified folder. This can then be used in the Explore Q/C tool to explore and uncover differences between cohorts.